http://lotfollahi.com/publication/cpa/ WebSingle cell type expression cluster i The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

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WebApr 15, 2024 · Here, we present the Compositional Perturbation Autoencoder (CPA), which combines the interpretability of linear models with the flexibility of deep-learning approaches for single-cell... WebApr 11, 2024 · To systematically dissect the transcriptomic differences between homeostasis and chronic dry skin at the single-cell level, we carried out scRNA-seq on two biological mixed samples from each group, and each mixed sample contained three mice (Fig. 1 A).After quality control, we obtained 18,578 cells in the AEW groups and 24,160 cells in … paisley leggings for women

Compositional perturbation autoencoder for single-cell ... - bioRxiv

WebWhat is CPA? CPA is a deep generative framework to learn effects of perturbations at the single-cell level. CPA encodes and learns phenotypic drug response across different cell types, doses and drug combinations. CPA allows: Out-of-distribution predicitons of unseen drug combinations at various doses and among different cell types. WebSingle cell type expression cluster i The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar … Websingle cell type kidney. adipose tissue bone marrow brain breast bronchus colon endometrium esophagus eye heart muscle. kidney liver lung lymph node ovary pancreas pbmc placenta prostate rectum. salivary gland skeletal muscle skin small intestine spleen stomach testis thymus tongue vascular. cell type proteome. paisley lewis