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Cufflinks

WebCufflinks [ 30] was used for transcript assembly of individual samples. All assemblies were merged to create a reference transcript, which was used to quantify transcript expression using Salmon [ 31 ]. DESeq [ 32] was then used to find differentially expressed genes. WebCufflinks assembles transcripts and estimates their abundances in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set … WebJan 29, 2014 · Co-regulation search allows users to retrieve all UTRs controlled at the PTR level by two or more trans-factors: this feature can be extremely useful, for instance, to identify different factors controlling a common process … pelvic clicking in pregnancy